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1 GIZMO February 21, 2019 GIZMO February 21, / 17

2 GIZMO Users Guide URL phopkins/site/gizmo_files/gizmo_documentation.html /home/hydro00/gizmo_hydro2018.tar.gz GIZMO_hydro2018/practice User Guide (scripts ) scripts/test_problems/ practice GIZMO February 21, / 17

3 (1) Intel XC50 module list PrgEnv-intel/6.0.4 gsl/2.4o intel-18.0 cray-hdf5/ fftw/ mdule load (or add) GIZMO February 21, / 17

4 (2) gizmo Config.sh cp Template-Config.sh Config.sh editor (vim ) Makefile.systype SYSTYPE= XC-intel GIZMO February 21, / 17

5 1: Config.sh (10 K) n = 0.5 cm erg M 1000 Users Guide n = cm 3, E = J. BOX PERIODIC SELFGRAVITY OFF EOS GAMMA=(5.0/3.0). MFM (HYDRO MESHLESS FINITE MASS) make Config.sh make GIZMO February 21, / 17

6 1: /work/hydro??/sedov GIZMO sedov.params sedov.param sedov.params InitCondFile /path_to_ic_dir/sedov_ics OutputDir. current directory GIZMO February 21, / 17

7 1: run.sh 1 MPI (40 ) GIZMO_hydro2018 batch_gizmo.sh run.sh #PBS -N sedov #PBS -l nodes=1 #PBS -q test-bp cd ${PBS O WORKDIR} aprun -n 40./GIZMO sedov.params > mpi output.txt qsub run.sh OutputDir snapshto???.hdf5 ( ) GIZMO February 21, / 17

8 1: yt /work/hydro??/ ipython ipython (or projection.py) import yt ds = yt.load( /xc-work/okamtotk/hydro/tests/sedov/snapshot_010.hdf5 ) snapshot plot = yt.projectionplot(ds, z, fields=[( gas, density )]) plot.save() projection plot display snapshot_011_projection_z_density.png plot = yt.projectionplot(ds, z, fields=[( gas, temperature )]), weight field=[( gas, density )] projection map. GIZMO February 21, / 17

9 1: yt python ipython (or sedov density.py) import h5py import numpy as np ds = h5py.file( /xc-work/okamtotk/hydro/tests/sedov/snapshot_010.hdf5, r ) # list(ds.kyes()) # Header PartType0 PartType0 (gas) list(ds[ PartType0 ].keys()) #. Header list(ds[ Header ].attrs) # simulation box boxlen = ds[ Header ].attrs[ BoxSize ] GIZMO February 21, / 17

10 1: matplotlib plot ipython (or sedov density.py) import matplotlib.pyplot as plt c = np.full(3, 0.5*boxlen) # pos = np.array(ds[ PartType0/Coordinates ]) r = np.sqrt( (pos[:,0] - c[0])**2 + (pos[:,1] - c[1])**2 + (pos[:,2] - c[2])**2) # plt.plot(r, ds[ PartType0/Density ],,, rasterized=true) plt.savefig( density.png ) exit ipython GIZMO February 21, / 17

11 2: SPH PSPH (Saito & Makino DISPH ) Config.sh HYDRO PRESSURE SPH Cullen & Dehnen 2010 make GIZMO cp sedov.params sedov psph.params sedov psph.params SnapshotFileBase snapshot snapshot psph run.sh sedov.params sedov psph.params qsub run.sh GIZMO February 21, / 17

12 2: sedov.txt sedov.py /home/okamtotk/hydro sedov.py python sedov.py sedov.png GIZMO February 21, / 17

13 : UnitLength in cm UnitMass in g UnitVelocity in cm per s e+21, 1.989e+43, kpc, M, km/s code units GIZMO February 21, / 17

14 3: Config.sh HYDRO PRESSURE SPH The Noh (Spherical Implosion) Problem (noh.params) BOX PERIODIC SELFGRAVITY OFF EOS GAMMA=(5.0/3.0) Kelvin Helmholtz Instabilities (kh mcnally 2d.params) BOX PERIODIC BOX SPATIAL DIMENSION=2 PREVENT PARTICLE MERGE SPLIT SELFGRAVITY OFF KERNEL FUNCTION=3 EOS GAMMA=(5.0/3.0) GIZMO February 21, / 17

15 3: The Blob Test (blob.params) BOX PERIODIC BOX LONG X=1 BOX LONG Y=1 BOX LONG Z=3 SELFGRAVITY OFF EOS GAMMA=(5.0/3.0) The Evrard (Spherical Collapse) Test (evrard.params) EOS GAMMA=(5.0/3.0) ADAPTIVE GRAVSOFT FORGAS bolob.params SofteningGas SofteningGasMaxPhys SPH GIZMO February 21, / 17

16 4: ( m i V tot = ρ i V tot BoxSize 3 SPH MFM, MFV i GIZMO February 21, / 17

17 5: SPH 3 SPH m j W(r i j, h i ) ρ j j 1 i W(r i j, h i ) { } 8 πh (u 1.0)u 2 for u = r 3 i j /h i 0.5 i { W(r i j, h i ) = } 8 πh 2.0(1.0 u) 3 for 0.5 u i 0 for u > 1.0 h i SmoothingLength GIZMO February 21, / 17

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