25 (2), Available online at 原著論文 サトウキビ育種のための系譜情報管理システムの開発 * 要旨 Web キーワード はじめに * Correspon
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1 25 (2), Available online at 原著論文 サトウキビ育種のための系譜情報管理システムの開発 * 要旨 Web キーワード はじめに * Corresponding Author yusuke@affrc.go.jp FAO
2 25 (2), 図 1 主要作物の単収の推移 図 2 わが国のサトウキビ単収の推移 69
3 系譜情報管理システム Breed Mate Tenset Kintraks R Jason Web 2 Pedigree Point Breed Mate < Pedigree Point 表 1 システム稼働環境 Web Apache MySQL PHP 5.3 OS CloudLinux システムの改良点 Pedigree Point Pedigree Point データベースの設計 2 8 NiF
4 25 (2), 2016 表 2 データベース構造 ID Name NiF8 Femal ID Male ID Reg Regist or Not Sex Male or Female Species Spontanium Reg No. :KF81-11 No.30 Smut R < > S Num M < > F Leng L < > S Diam W < > T Suc H < > L Mature E < > L Break R < > S photo KTn03-54 Name ID Female Male ID Name ID Female Male Reg Sex Species RR R RS S SS データの作成と管理 Web CSV 2 Pedigree Point Breed Mate Pedigree Explore Pedigree Explore 系譜システムの利用利用方法 NiTn20 NiF4 NiF 近交係数の計算方法 (1 + F A ) (1/2) (n+1) F A 71
5 図 3 一覧表示 図 4 系譜画面 72
6 25 (2), 2016 図 5 兄弟画面 n NiF4 2 NCo310 2 NCo310 NCo310 7 A = 4 A S 19 3 NCo310 Black Cheribon NCo310 Black Cheribon = 7 2 (1/2) (7+1) NCo310 F A 系譜システムを用いた品種分析 n 2 n
7 図 6 近交係数画面 NiF おわりに
8 25 (2), 2016 図 7 農林 20 号の全系譜 75
9 表 3 近交係数の計算元データ NCo310 POJ2364 Co213 EK28 POJ100 POJ213 BlackCheribon A 4 B 8 C 8 D 7 E 10 G 9 N 12 F 10 H 9 O 11 I 10 P 11 J 10 Q 10 K 9 R 13 L 10 S 13 M 10 表 4 近年品種の系譜構造 8 NiF Ni NiTn Ni Ni Ni Ni Ni Ni Ni NiTn NiTn NiTn Ni Ni Ni NiN NiH Ni Ni Ni Ni KN KY KTn RK
10 25 (2), 2016 図 8 祖父母が把握できる品種の重複率と近交係数 引用文献 2011 NiF8 Ni9 80: Jason, P., T. Therneau and D. Schaid (2014) The kinship2 R Package for Pedigree Data, Hum Heredity, 78(2): : SSR 239: (1): (2): (1): : (3):
11 Agricultural Information Research 25(2) Development of a Sugarcane Pedigree Database for Breeders Yusuke Tarumoto*, Taiichiro Hattori, Minoru Tanaka, Takeo Sakaigaichi and Michiko Hayano NARO Kyushu Okinawa Agricultural Research Center (NARO/KARC), Nishinoomote, Kagoshima , Japan Abstract Pedigree information is important for crossing and selection in sugarcane breeding. We developed a sugarcane pedigree database that is a web-based application using PHP and MySQL, which allows breeders anywhere to share pedigree information. For each sugarcane line, it contains data on culm thickness and length, sugar content, maturity, and disease resistance. The database has information on more than 600 sugarcane lines in Japan, providing not only pedigree reports but also offspring and sibling reports. The genetic distance of each line is evaluated based on the inbreeding value calculated using the line s pedigree information. Although ancestor information is lacking in many sugarcane pedigree data, thus limiting the application of inbreeding values, in those lines for which grandparents have been identified, the overlap rate in the pedigree line and inbreeding value provide an efficient way to evaluate the genetic distance. Keywords sugarcane, database, pedigree, inbreeding, breeding * Corresponding Author yusuke@affrc.go.jp 78
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