Do It Yourself DICOM Linux GUI CUI SQL TCP/IP 2003/04/11 3 PC-AT AT OK HDD OS : Linux OK DICOM : CTN 2003/04/11 4

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1 CyberRad 2003 DICOM DICOM DICOM 2003/04/11 2

2 Do It Yourself DICOM Linux GUI CUI SQL TCP/IP 2003/04/11 3 PC-AT AT OK HDD OS : Linux OK DICOM : CTN 2003/04/11 4

3 CTN Electronic Radiology Laboratory at the Mallinckrodt Institute of Radiology, Washington University in St. Louis DICOM anonymous-ftp ftp Central Test Node CTN Image Storage SCP archive_server 2003/04/11 5 CTN 2003/04/11 6

4 RedHat Linux CTN make install CTN archive_server jpeg PostgreSQL WWW Web apache PHP4 Windows Internet Explorer Javascript,, DHTML 2003/04/11 7 PC AT AT RedHat Linux = PostgreSQL = apache = PHP4 = CTN = ftp://dicomctn.wustl.edu/pub/dicom/software/ctn/ 2003/04/11 8

5 patch hu.ac.jp/~kmuto/webdas/ WebDAS CTN JPEG PHP DICOM Viewer Java applet mars.elcom.nitech.ac.jp/dicom/ PC RedHat Linux /tmp make install configuration 2003/04/11 9 DICOM 2003/04/11 10

6 DICOM RedHat Linux PC PC Linux CTN 2003/04/11 11 RedHat RedHat Linux 8J PC PC RedHat PostgreSQL,, apache, PHP4 make install IP DHCP 2003/04/11 12

7 RedHat Linux 8J CD-ROM ROM PC 2003/04/ /04/11 14

8 Install 2003/04/ /04/11 16

9 IP LAN Local Area Network IP RFC1918 IP Net mask Class / A / 16,777,214 B / 65,534 C / /04/ /04/11 18

10 2003/04/ /04/11 20

11 2003/04/11 21 RedHat Linux 8J 2003/04/11 22

12 root 2003/04/11 23 RedHat Linux 8J 2003/04/11 24

13 terminal make install terminal 2003/04/11 25 CTN ctn PostgreSQL postgres useradd s /bin/tcsh ctn passwd ctn New UNIX password: ******** ctn Retype new UNIX password: ******** useradd postgres passwd postgres New UNIX password: ******** postgres Retype new UNIX password: ******** 2003/04/11 26

14 PostgreSQL postgresql tar.gz make install /home/db /home/postgres/.bashrc # pgsql env. export POSTGRES_HOME=/usr/local/pgsql export PGLIB=$POSTGRES_HOME/lib export PGDATA=/home/db # export PATH=$PATH:$HOME/bin:$POSTGRES_HOME bin:$postgres_home/bin export MANPATH=$MANPATH:$POSTGRES_HOME/man 2003/04/11 27 mkdir /usr/local/pgsql PosgreSQL chown postgres:postgres /usr/local/pgsql su postgres postgres tar zxvf /tmp/postgresql tar.gz cd postgresql /configure --enable-multibyte=euc_jp --enable-odbc make make check All 79 tests passed. make install OK 2003/04/11 28

15 PostgreSQL 1 /etc/ld.so.conf /usr/local/pgsql/lib /sbin/ldconfig v 2003/04/11 29 PostgreSQL 2 postgresql /home/postgres/postgresql-7.2.3/contrib/start 7.2.3/contrib/start- scripts/linux PGDATA= PGDATA= /home/db cd /etc/rc.d/init.d cp /home/postgres/postgresql-7.2.3/contrib/start-scripts/linux postgres chmod 755 postgres /sbin/chkconfig --add postgres rc script posgres 2003/04/11 30

16 PostgreSQL PC reboot postgres su (root mkdir /home/db chown -R postgres:postgres /home/db exit initdb -E EUC_JP --no-locale /etc/rc.d/init.d/postgres start postgresql createdb createuser ctn Shall the new user be allowed to create database? (y/n) y Shall the new user be allowed to create new users? (y/n) n 2003/04/11 31 postgresql

17 CTN ctn tar.z ftp://dicomctn.wustl.edu/pub/dicom/software 2003/4 ver CTN patch hu.ac.jp/~kmuto/webdas/ linux/ctn archive_server_jpeg.diff Jpeg archive_server_jpeg) JPEG IJG jpeg jpeg CTN etc 2003/04/11 33 Jpeg archive_server DICOM DICOM OS file system DICOM file archive_server_jpeg OS file system DICOM file 7fe0,0010 JPEG DICOM file.jpg JPEG DICOM file _s.jpg 2003/04/11 34

18 archive_server /home/images/1_2_392_x_y_z_a_b/1_2_392_x_y_z_c_d/ct_340_1.dcm archive_server_jpeg /home/images/1_2_392_x_y_z_a_b/1_2_392_x_y_z_c_d/ct_340_1.dcm DICOM /home/images/1_2_392_x_y_z_a_b/1_2_392_x_y_z_c_d/ct_340_1 CT_340_1.jpg DICOM jpeg /home/images/1_2_392_x_y_z_a_b/1_2_392_x_y_z_c_d/ct_340_1 CT_340_1_s.jpg_s.jpg DICOM jpeg 2003/04/11 35 CTN ctn tar.z CTN /usr/local/ctn /home/ctn/.cshrc # for PostgreSQL setenv PGLIB "/usr/local/pgsql/lib usr/local/pgsql/lib" setenv PGDATA "/home/db setenv PATH "/usr/local/ctn/bin:/usr/local/pgsql/bin:${path usr/local/ctn/bin:/usr/local/pgsql/bin:${path}" 2003/04/11 36

19 su (root mkdir /usr/local/ctn chown ctn:ctn /usr/local/ctn exit mkdir ctn cd ctn tar zxvf /tmp/ctn tar.z patch -p1 -i /tmp/ctn archive_server_jpeg.diff patch source./environments/linux/linux.psql.lesstif.noopt.env make cd facilities ; make links ; cd.. cd libsrc ; make install ; cd.. cd apps ; make install ; make gui-install ; cd /04/11 37 CTN CTN Modality External client archive_server control database image database FIS database CTNSERVER control database = CTNSERVER Image database = Q/R, Storage FIS database = Storage Commitment archive_server archive_agent, ris_gateway FIS database 2003/04/11 38

20 createdb postgresql cd ~/ctn-3.0.4/cfg_scripts/pgsql./createdb CTNControl CTNControl control database./createdb dicomimage dicomimage image database./createtables Control CTNControl./CreateTables DIM2 dicomimage./createtables DIMView dicomimage cd 2003/04/11 39 CTNControl CTN AE Application Entity TCP Port Num IP address MAC address AE Title : client1 AE Title : server1 DICOM Modality archive_server TCP IP Ethernet TCP/IP network TCP TCP Port Num IP IP address Ethernet MAC address hostname : testclient hostname : testserver 2003/04/11 40

21 CTNControl /home/ctn/test.ctn! ApplicationEntity # AE Title ^ Node ^ Port ^ Org ^ Comment server1 ^ testserver ^ 3000 ^ ^ local test client1 ^ testclient ^ 3001 ^ ^ local test! Security Matrix # Requesting ^ Responding client1 ^ server1! StorageAccess # Flag ^ SCP Title 0 ^ server1 ^ DBKey ^ Owner ^ Group ^ Comment ^ dicomimage ^ ^ ^ local test! StorageControl # Requesting ^ Responding ^ Medium ^ Root client1 ^ server1 ^ ^ /home/images 2003/04/11 41 /etc/hosts testclient hostname IP /etc/hosts # Do not remove the following line, or various programs # that require network functionality will fail testserver localhost.localdomain localhost testserver tsetclient loghost 2003/04/11 42

22 CTNControl DB DICOM /home/images su (root mkdir /home/images chown ctn:ctn /home/images exit load_control < /home/ctn/test.ctn CTNControl 2003/04/11 43 archive_server archive_server_jpeg Usage: [-e] [-f db] [-g generic] [-i] [-j quality] [-k width] [-l logfile] [-n node] [-o max] [-q] [-r] [-t] [-v] [-z queue] port -e Examine received images and do SOP validation -f Use db as control database instead of default (CTNControl) -g An override in the Security Matrix. If an application is configured to connect to <generic>, it has access to all applications on this server. -i Ignore some problems in Association Request -j Make Jpeg file and set compression quality. -k Set width of jpeg thumbnail image. (default: 128 pixel) -l Place log of association requests in <logfile> -n Use <node> as name of server rather than hostname -o Allow <max> simultaneous connections for an organization -r Reduced capability. Turn off anything using FIS database -q Quiet mode, don't dump a lot of messages to terminal -t Use threaded version. -v Place DUL and SRV facilities in verbose mode -z Turn on queueing of status information port TCP/IP port address archive_server_jpeg -i -r -j jpeg 2003/04/11 44

23 CTN /04/11 46

24 WWW Web apache PHP4 PostgreSQL web PHP web web Web DICOM web PHP 2003/04/11 47 URL http protocol http Microsoft IE apache Web server DICOM protocol archive_serve_jpeg DICOM Viewer Java applet JPEG images DICOM images PHP4 SQL pglib dicomimage Data base JPEG images Linux ext3 filesystem DICOM images Windows Linux 2003/04/11 48

25 apache apache_ tar.gz apache /usr usr/local/apache root tar zxvf /tmp/apache_ tar.gz cd apache_ OPTIM= -O2./configure --enable-module=so make make install 2003/04/11 49 apache httpd #!/bin/sh # Startup script for the Apache Web Server # # chkconfig: : # description: Apache is a World Wide Web server. # processname: httpd # pidfile: : /var/run/httpd.pid/ # config: : /usr/local/apache/conf/httpd.conf/ # Source function library.. /etc/rc.d/init.d/functions case "$1" in start) echo -n n "Starting httpd: : " daemon /usr/local/apache/bin/httpd/ echo touch /var/lock/subsys/httpd/ ;; stop) echo -n n "Shutting down http: " killproc httpd echo rm -f f /var/lock/subsys/httpd/ rm -f f /var/run/httpd.pid/ ;; status) status httpd ;; restart) $0 stop $0 start ;; reload) echo -n n "Reloading httpd: : " killproc httpd -HUP echo *) ;; echo "Usage: $0 {start stop restart reload status}" exit 1 esac exit /04/11 50

26 apache apache httpd cd /etc/rc.d/init.d chmod 755 httpd /sbin/chkconfig add httpd cd rc 2003/04/11 51 apache apache httpd.conf /usr/local/apache/conf/http.conf Web /home/webdas webdas/ php html /home/images/ DICOM JPEG» CTNControl StorageControl Root PHP4 MIME PHP 2003/04/11 52

27 DocumentRoot /home/webdas <IfModule mod_mime.c> AddType application/x-httpd httpd-phpphp.php PHP MIME # This should be change to whatever you set DocumentRoot to <Directory /home/webdas > <IfModule mod_dir.c> index.php DirectoryIndex index.html index.php index.cgi </IfModule IfModule> ErrorLog /home/ctn/httpd_logs/error_log log /home/ /home/ctn/httpd_logs CustomLog /home/ctn/httpd_logs/access_log common <IfModule mod_alias.c> Alias /images/ "/home/images/" <Directory "/home/images/"> Options Indexes MultiViews AllowOverride None Order allow,deny Allow from all </Directory> </IfModule IfModule> 2003/04/11 53 apache

28 PHP4 php tar.gz PHP4 /usr/local/php4 tar zxvf /tmp/ php tar.gz cd php /configure? --prefix=/usr/local/php4? --enable-mbstring --enable-mbstr-enc-trans? --enable-mbregex --enable-bcmath --enable-ftp? --enable-trans-sid? -with-apxs=/usr/local/apache/bin/apxs? -with-gd --enalbe-gd-native-ttf? -with-pgsql=/usr/local/pgsql make make install cp php.ini-dist /usr/local/php4/lib/php.ini 2003/04/11 55 PHP4 PHP4 php.ini /usr/local/php4/lib/php.ini Register_globals = On web PHP On (^_^ ; include_path =.:/home/webdas-inc Web web 2003/04/11 56

29 PHP4 WebDAS hu.ac.jp/~kmuto/webdas/ linux/webdas-linux linux-cb tar.gz09.tar.gz /home/webdas webdas /home/webdas webdas-inc mkdir /home/webdas mkdir /home/webdas-inc chown R ctn:ctn /home/webdas chown R ctn:ctn /home/webdas-inc chmod a+rx /home/webdas /home/webdas-inc su ctn cd /home tar zxvf /tmp/webdas-linux-cb tar.gz exit 2003/04/11 58

30 WebDAS 2003/04/11 60

31 DicomImage ID path file 2003/04/11 61 SQL ID SELECT * FROM StudyLevel WHERE PatParent = PatParent StudyLevel UID x.y.z.a.b.x.y.z.a.b SELECT * FROM SeriesLevel WHERE StuParent = x.y.z.a.b UID x.y.z.c.d path) SELECT Path FROM ImageLevel, InstanceTable WHERE SerParent = x.y.z.c.d AND ImageLevel.SOPInsUID = InstanceTable.ImageUID) 2003/04/11 62

32 PHP4 PHP4 PostgreSQL SQL $objconn = pg_connect( user user=ctn password=passwd passwd dbname=dicomimage dicomimage ); // dicomimage $SQL = SELECT * FROM ImageLevel, InstanceTable WHERE SerParent = x.y.z.c.d AND ImageLevel.SOPInsUID = InstanceTable.ImageUID) ; // SQL $objresult = pg_exec($objconn,, $SQL); // $rows = pg_numrows($objresult); // $val = pg_result($objresult,1, Path Path ); // Path $val /home/images/1_2_392_x_y_z_a_b/1_2_392_x_y_z_c_d/ct_340_1.dcm Linux 2003/04/11 63 PHP4 web HTML $val /home/images/1_2_392_x_y_z_a_b/1_2_392_x_y_z_c_d/ct_340_1.dcm Linux $strpath = str_replace("/home/images", "", $val$ val); $strpath = str_replace(".dcm",".jpg",$strpath); $strpath = " $strpath$ strpath; echo "<IMG SRC= "$ "$strpath ">"; Web <IMG SRC= 1_2_392_x_y_z_c_d/CT_340_1.jpg > HTML JPEG 2003/04/11 64

33 WebDAS /home/webdas webdas/ menu.php top patient-study.php - refimage_topflame.php study.php series.php image.php JPEG dicomview.php DICOM viewer Java applet /dicomviewer/* DICOM viewer Java applet search_top.php search_result.php dcmdump.php DICOM list.css Web /img/* Web /inc/* DHTML Javascript /home/webdas webdas-inc/ webdassite.php passwd common.php Web include common-mb.php mb.php 2003/04/ patient patient-study.php 2003/04/11 66

34 image.php study.php series.php 2003/04/11 67 DICOM tag dcmdump.php 2003/04/11 68

35 image.php 2003/04/11 69 DHTML 2003/04/11 70

36 URL Javascript URL 2003/04/11 71 DICOM Viewer Java applet dicomview.php 2003/04/11 72

37 DICOM http Viewer applet Viewer applet URL DICOM DICOM http 2003/04/11 73 search_result.php search_top.php refimage_topflame.php 2003/04/11 74

38 PostgreSQL apache PHP4 web Internet Internet WWW Google IT IT IT /04/11 75

Microsoft PowerPoint - チュートリアル5.ppt

Microsoft PowerPoint - チュートリアル5.ppt CyberRad 2006 チュートリアル(5) オープンソースの使い方各論 : DICOMサーバ藤田保健衛生大学衛生学部武藤晃一 kmuto@fujita-hu.ac.jp 本チュートリアルの概要オープンソースフリーソフトウェアとして公開されている DICOM サーバにはどんなものがあるのか? DICOM サーバ = 保存 SCP,