Microsoft Word - CATNewsVol2No7Text.doc

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Transcription:

COMPLEX ADAPTIVE TRAITS Newsletter 23 (3) The International Plant & Animal Genome XX Conference Vol. 2 No. 7 2011

DDBJ Sequence Read Archive (DRA) DDBJ Linux BLAST R

DDBJ Sequence Read Archive (DRA) DRA International Nucleotide Sequence Database Collaboration (INSDC) NCBI Sequence Read Archive (SRA) EBI Sequence Read Archive (ERA) (basecall + quality) fastq [http://trace.ddbj.nig.ac.jp/images/doc/objects.png] Study, Experiment, Sample, Run D-way spot basecaller

BLAST reciprocal best hit Linux BLAST Scientific Linux 6.1 Live USB ncbi blast+blast SELECT RNA-seq trinity TAIR10 http://koke.asrc.kanazawa-u.ac.jp/howto/reciprocalblastbesthit.html unix like cd BLAST SELECT

R R multi-fasta N50

The International Plant & Animal Genome XX Conference µ

(DNARNA ) du linked loop adapter (NEB workshop) RNA-seq Ribo-zero (Epicentre)

Pacific Biosciences Workshop

Agilent Workshop QTL GWAS

GMOD

COMPLEX ADAPTIVE TRAITS Newsletter Vol. 2 No. 7 COMPLEX ADAPTIVE TRAITS Newsletter URLhttp://staff.aist.go.jp/t-fukatsu/SGJHome.html