Microsoft Word - 事前配布資料表紙_難波先生
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1 三井住友 Pre-EMP プログラム 事前配布資料 植物医科学 生命科学の基礎 講師 : 難波成任 2016 年 9 月 21 日
2 東京大学EMP GMO 植物の健康 事前資料 東京大学大学院農学生命科学研究科 難波成任 EMP Executive Management Program 生物 人間 植物 器官 動物 昆虫 菌類 生物の細胞数 細胞 細菌 組織 1 ヒト 約60兆個 線虫 1,000個 細菌 1個
3 2
4 ! ①好気性細菌 ミトコンドリア を獲得し ②さらに光合成細菌 葉緑体 を獲得し エネルギーの大量生産が可能になった 光合成能を獲得した細胞は 植物へと進化 ミトコンドリア 葉緑体 植物の 斑入り は 葉緑体の欠陥により 引き起こされる 動物 植物はいずれも真核生物 植物細胞 液胞 細胞壁 細胞膜 動物細胞 細胞膜 葉緑体 小胞体 ゴルジ体 小胞体 核 核 ゴルジ体 ミトコンドリア ミトコンドリア 青文字 植物特有の細胞内小器官 3
5 ! 4
6 モデル生物 ゲノムが小さく 実験に扱いやすい生物 ゲノムの大きさは生物種ごとに大きく異なる 線虫 ショウジョウバエ ナズナ! 核 5 ヒトの全ゲノム情報 22対44本の常染色体と 1対2本の性染色体 に分割された状態で 核の中にある
7 細胞を持たない 核酸 DNA RNA とタンパク質のみで構成 タバコモザイクウイルス 世界で最初に発見されたのは 植物に感染するウイルスだった 1/1000 タンパク質 RNA ウイルスは非常に微小であり 電子顕微鏡でなければ観察できない! ファイトプラズマ 生物 ミミウイルス 無生物 B R I E F C O M M U N I C AT I O N S ゲノム 2004 Nature Publishing Group 大きさ systems for nucleosides, nucleotides or NADP/NADPH were identified in the phytoplasma genome, although they are probably present. Most bacteria, including reduced-genome bacteria8 10, produce F0F1-type ATP synthase and synthesize ATP through a reverse proton discharge reaction. The F0F1-type ATP-synthase subunits necessary for ATP-proton motive force interconversion are essential in Mycoplasma genitalium8,12, and all ATP-synthase subunits are members of the proposed minimal gene set indispensable for life13. Chlamydia trachomatis lacks these genes but contains the archaeal A0A1-type ATP synthase14. Unexpectedly, none of the eight ATP-synthase subunits was identified in the phytoplasma genome. Phytoplasma is the first living organism found to lack them all13. C. trachomatis has an ATP/ADP translocase and imports host ATP14, but the phytoplasma genome does not encode similar genes, suggesting that it imports host ATP by an unknown mechanism. Alternatively, a 遺伝子数 nm 860 ATP synthesis in phytoplasma might be strongly dependent on the glycolysis pathway, as glycolysis turnover is increased in B. subtilis strains in which the atp operon has been deleted15. The phytoplasma chromosome includes a gene encoding sucrose phosphorylase, which cleaves sucrose into glucose and fructose. But evidence that its ORF is incomplete and the absence of sucrose phosphorylase activity suggest that this gene is nonfunctioning; an ancestral phytoplasma may have had a functional copy of this gene (data not shown). Sucrose concentration is much lower in insect cells, which might explain why phytoplasmas no longer require this gene. Analysis of the phytoplasma genome identified glucanase and hemolysin-like proteins as possible virulence factors. No other known virulence genes were found in the phytoplasma genome, suggesting that new mechanisms govern their virulence. Although metabolic genes are scarce, the phytoplasma genome contains as many as 27 genes encoding transporter systems, such as malate, metal-ion and amino-acid transporters, some of which have multiple copies (Fig. 1b; Supplementary Table 5 online), suggesting that phytoplasmas aggressively import many metabolites from the host cell. The consumption of these metabolites with phytoplasma infection may greatly disturb the metabolic balance of the host cell, causing disease symptoms. In addition to many transporter genes, there are multiple redundant copies of the genes uvrd, hflb, tmk, dam and ssb (18% of the total genes), which are present as single genes in many bacteria (Fig. 1a). This might explain why the phytoplasma genome is larger than that of M. genitalium (which is!580 kb) despite the loss of many metabolic genes. 103 塩基 754個 b Figure 1 Schematic representation of the chromosome and metabolic pathways of phytoplasma. (a) Circular representation of the phytoplasma chromosome. The outer circle shows predicted protein-coding regions on the plus strand classified by function using the color code at the bottom of the figure. The second circle shows predicted protein-coding regions on the minus strand. The third and fourth circles show the multiple redundant genes on the plus and minus strands, respectively (see Supplementary Note online). The fifth circle shows the GC-skew value ((G C)/(G + C)). The sixth circle shows the G + C content (higher values outward). The seventh and eighth circles show trnas (blue) and rrnas (red) on the plus and minus strands, respectively. The scale in kb is indicated (numbers on the outside of the chromosome). (b) An overview of phytoplasma metabolism and transport. Shown are transporters and the main elements of metabolic pathways, deduced from the set of genes with predicted functions. Red arrows: pathways or transporters found in the M. genitalium genome but not in the phytoplasma genome. Blue arrows: pathways or transporters found in the phytoplasma genome but not in the M. genitalium genome. Detailed information about abbreviated names is given in Supplementary Note online. 生物に必須な エネルギー 合成遺伝子 をもたない 28 VOLUME 36 NUMBER 1 JANUARY 2004 NATURE GENETICS nm 1, 塩基 1262個 細胞に似た構造をもち 生物と同じ遺伝子を多数もつ
8 DNAは含まれる塩基の種類によって A T G Cの4種類がある ポリマー ポリヌクレオチド を形成する ポリヌクレオチドは塩基の相補性により 二本鎖になり 二重らせん の状態で 存在している 塩基の相補性 AとT GとCはそれぞれ 水素結合により引かれ合う A T G C 正確に複製するためであると考えられる 細胞が分裂するとき DNAの複製がおこなわれるが その様式は 半保存的複製 と呼ばれる 半保存的複製 二重鎖の片方を鋳型とし もう片方を新たに作り上げることで複製 が行われ もとのDNAが半分だけ保存されることを意味する 7
9 DNAの遺伝情報は RNAを介して タンパク質に翻訳される タンパク質は20種類のアミノ酸がポリマーとなったもの DNA 4種類 A T G C RNA 4種類 A U G C タンパク質 20種類 Ala Cys 遺伝情報の伝達は一方通行であり 生命のセントラルドグマ 中心教義 と呼ばれる 20種類のアミノ酸 3つのRNA 43=64通り で 1つのアミノ酸を指定している コドン暗号表 3つのRNA単位を コドンと呼ぶ ゲノムDNAを解読すれば タンパク質の情報も明らかにできる 8
10 ! 9
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