sp8ct : 2 (1-3) UNIX Linux sp8ct/src make install sp8ct/bin SPring-8 pr47 /home/image/bin sp8ct/src Makefile Intel-C compiler Makefile GNU-C compiler

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れんまいりぐら
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1 SP- CT (0) SP- CT (1) (2) SP- CT (3) (4) SP- CT (0) SP- CT (1) (1-0) SPring-8 sp8ct/tmp/sp8ct.zip sp8ct/tmp/sp8ct.taz (1-1) DOS sp8ct/exe MinGW Minimalist GNU for Win32 GNU-C compiler (1-2) Cygwin DOS DOS Cygwin DOS sp8ct/exe DOS Cygwin Cygwin make make install.bin UNIX Linux

2 sp8ct : 2 (1-3) UNIX Linux sp8ct/src make install sp8ct/bin SPring-8 pr47 /home/image/bin sp8ct/src Makefile Intel-C compiler Makefile GNU-C compiler Makefile pr47 /home/image/src/sp8ct (2) SP- CT (2-0) SPring-8 SP- CT CD DVD CT CT CT CT CT 16 CD DVD CT pr47 /home/tmp/ /work/tmp/ CT CT

3 sp8ct : 3 CT (2-1) SP- CT output.log dark.img d.img dark dark.img mkdark.bat CT dark d01.img d02.img dark.img dark d0[0,1].img hp2mean d01.img d02.img d.img dark dark.img d.img d.img dark.img q*.img X I0 X I I0 I output.log raw RAW dit_tbl RAW d.tbl i.tbl t.tbl dit_tbl hp2sg d.tbl i.tbl t.tbl DOS for /d %i in (RAWS/*) dit_tbl RAWS/%i >nul UNIX Cygwin B-shell sh or bash for i in RAWS/* ; do dit_tbl $i >/dev/null ; done UNIX Cygwin C-shell csh or tcsh foreach i (RAWS/*) dit_tbl $i >/dev/null end RAWS hp2sg dit_tbl

4 sp8ct : 4 (2-2) CT CT X I HiPic I q002.img hp2tiff q002.img q002.tif TIFF viewer X I0 I dark I0 I I0 X X =(I-dark ) / ( I0 - dark ) X = log(i0 - dark) - log(i - dark) (2-2-0) X txy_tif hp3txy pxy_tif hp3pxy RAW [a] pxy_tif RAW dark d.img I0 i.img I t.img d.img = RAW/dark.img i.img = RAW/q.img t.img = RAW/q.img at angle = t.img I0 i.img TIFF [b] pxy_tif RAW BPS TIFF [c] pxy_tif RAW base step BPS TIFF BPS 16 viewer BPS 8 16 TIFF TIFF xp = tif 180.tif = tif [c] base step = base + step [b] base step

5 sp8ct : 5 [c] base step (2-2-1) z1 z z1 z2 (2-3) DO Detector Offset dr DO Detector Offset DO DO r0/dr r0 DO [0] CT [1]

6 sp8ct : 6 [2] [3] CT X S/N Signal-Noise ratio DO DO (2-3-0) 180 p000(n) p180(n) n N n=0 N-1 C d n = C+d 180 C-d = C-(n-C) = C 2-n p000(n) == p000(c+d) == p180(c-d) == p180(c 2-n) n p000(n) p180(n-1-n+ ) C C = (N-1+ ) /2 180 RMSD Root Mean Square of Differences RMSD( )ˆ2 = n { p000(n) - p180(n-1-n+ ) }ˆ2 / (N- ) n{} n {} RMSD( ) C DO r0/dr = -C RMSD C r0/dr 0.5 CT DO S/N DO 180 Cross Correlation CC CC = n { p000(n) p180(n-1-n+ ) } RMSD( ) DO DO

7 sp8ct : 7 z DO(z) = z + DO z DO CC DO CC DO (2-3-1) DO X DO R 1/R irac (2-3-2) RAW [a] DO_tbl RAW >DO.tbl [b] DO_tbl RAW z1 z2 >DO.tbl D000 = RAW/dark.img I000 = RAW/q0001.img T000 = RAW/q0002.img at angle = D180 = RAW/dark.img I180 = RAW/q1502.img T180 = RAW/q1504.img at angle = dark D??? I0 I??? I T??? 180 DO [a] [b] z=z1 z2 DO DO.tbl N Z or CT or CT

8 sp8ct : 8 Z+1 z CT z =0 Z-1 DO DO r0/dr RMSD 180 RMSD CC DO Z+2 DO DO(z) = z + z1 z2 DO (2-3-3) DO.tbl N 2/N DO r0/dr DO DO.tbl 2 Z+1 DO z1 z2 [b] DO.tbl DO DO (2-4) SG

9 sp8ct : 9 RAW dit_tbl RAW d.tbl i.tbl t.tbl [a] hp2sg d.tbl i.tbl t.tbl SG [b] hp2sg d.tbl i.tbl t.tbl z1 z2 SG [c] hp2sg d.tbl i.tbl t.tbl n1 z1 n2 z2 SG [d,i,t].tbl [d] dit_tbl RAW hp2sg SG [e] dit_tbl RAW hp2sg z1 z2 SG [f] dit_tbl RAW hp2sg n1 z1 n2 z2 SG [a] [d] CT N Z N Z 0 Z-1 CT [b] [c] [e] [f] z1 z2 [c] [f] n1 n2 n2 - n1 + 1 DO DO.tbl n1 DO hp2sg [a] [b] [c] d.tbl i.tbl t.tbl dark I0 I [d] [e] [f] hp2sg t.tbl I CT M I t.tbl m =0 M-1180 m/m hp2sg dark I0 I = log(i0 - dark) - log(i - dark) I I I0 dark I0 dark hp2sg I I0 dark SG portable architecture Intel CPU HP PA-RISC CPU

10 sp8ct : 10 (2-5) DO.tbl DO DO.tbl DO DO (2-5-0) z r0/dr R0 R0 = z + DO R0 step count R1(order) order = 0 count-1 r0/dr R1(order) = base + step order base R0 - step (count - 1) / 2 step count base R1(order) CT TEST test/ TEST.log test.log R1 DO r0/dr mkdir TEST sg2tgs_nai SG/z dr base step count t0 BPS TEST >TEST.log SG/z z dr CT base step count r0/dr R1(order) t0 CT BPS CT or16

11 sp8ct : 11 TEST CT r0/dr "_" TIFF TEST.log CT r0/dr DO r0/dr f1 f2 CT CT CT dr (2-5-1) CT CT viewer [0] CT CT CT [1] DO [2] R1 DO R1 R0 [3] CT DO TEST.log CT f1 f1 DO (2-6) CT 180 M R CT CT M R R>M/ CT sg2tgs_nai

12 sp8ct : 12 "_nai" sgs2tgs_nai sgs2tgs sgs2tgs CT sgs2tgs_nai sgs2tgs SPring-8 SP- CT "_nai" DO DO DO.tbl CT slant image DO CT CT CT 16 CT tif_h2o CT [a] CT LAC X CT CT CT [b] f0 = LAC df = LAC / PV 8 CT PV 200 CT CT =f0+df or =(CT -f0)/df CT CT LZW TIFF CT SP- CT CT LAC LAC f0 df

13 sp8ct : 13 (2-6-0) TG TG TG tg full slant CT 16 DO full full value resolution image DO slant slant image tg word byte CT DO 16 word 8 byte SG [a] sgs2tgs SG dr t0 BPS TG >TG.log [b] sgs2tgs SG dr t0 f0 df BPS TG >TG.log SG z hp2sg z DO r0/dr dr CT dr 1/dr LAC X CT 1/cm dr cm r0/dr z DO r0/dr = + z DO.tbl t0 SP- CT f0 df CT CT CT =f0+df f0 = CT df = ( CT - )/ CT

14 sp8ct : 14 BPS CT or16 TG CT ".tif" TIFF TG.log z r0/dr DO r0/dr f1 f2 CT (2-6-1) T N M T=N N M L L "_nai" L=1 DO L={(N/2) /M} CPUcompiler Intel Itanium2 CPU 1.6 GHz + Intel-C compiler ver Intel Xeon CPU 2.4 GHz + GNU-C compiler ver Xeon Intel Pentium4 architecture CPU Pentium / Pentium4 GHz) (2-7) pr47 pr47 pr47.spring8.or.jp SPring-8 BL47XU gw47 node1 node2 node3 node4 Intel Itanium2 CPU Linux RedHat AS 2.0 gw47 node1 node2 node3 node4 16 gw47 pr47 pr47 gw47 log-in Intel compiler

15 sp8ct : 15 fs47a fs47b Linux fs47a /home /misc/home fs47b /work /misc/work NFS Network File System SP- CT pr47 SPring-8 (2-7-0) LSF stand alone pr47 rlogin gw47 log-in pr47 10 Itanium2 CPU LSF LSF queue CPU LSF LSF LSF man lsload pr47 bsub LSF shell ">" meta character bjobs LSF bkill LSF bsub bjobs LSF bsub bjobs bsub LSF s LSF.log s bsub -o LSF.log C-shell csh or tcsh alias BSUB bsub -o LSF.log \!* BSUB bsub C-shell bash BSUB

16 sp8ct : 16 (2-7-1) z1 z2 mkdir -p test/z1 test/z2 BSUB sg2tgs_nai SG/z1 dr... BPS test/z1 \>test/z1.log BSUB sg2tgs_nai SG/z2 dr... BPS test/z2 \>test/z2.log sg2tgs_nai "..." ">" "\" (2-7-2) sgs2tgs BSUB sgs2tgs SG dr... BPS TG \>TG.log sgs2tgs ">" "\" LSF LSF sgs2tgs SG Z SG order = 0 Z-1 order = start + leap index index = 0 sgs2tgs sgs2tgs SG start leap count dr... BPS TG... start = 0 SG leap = 1 SG count = 0 index 0 count index order 0 Z-1 index SG 1000 pr47 10 CPU

17 sp8ct : 17 BSUB sgs2tgs SG dr... BPS TG \>TG0.log BSUB sgs2tgs SG dr... BPS TG \>TG1.log... BSUB sgs2tgs SG dr... BPS TG \>TG9.log C-shell foreach i ( ) BSUB sgs2tgs SG ${i} dr... BPS TG \>TG${i}.log end BSUB sgs2tgs SG dr... BPS TG \>TG0.log BSUB sgs2tgs SG dr... BPS TG \>TG1.log... BSUB sgs2tgs SG dr... BPS TG \>TG9.log C-shell foreach i ( ) BSUB sgs2tgs SG $i 10 0 dr... BPS TG \>TG${i}.log end pr47 10 CPU CPU TG DO CT TG[0-9].log 10 TG.log sort TG[0-9].log >TG.log rm TG[0-9].log (2-8) CT CT TIFF CT =f0+df f0 df sgs2tgs CT TIFF TIFF Image Description Tag tg2tg CT CT CT CT tg2tg [a] tg2tg srcdir namefile >HG.tbl [b] tg2tg srcdir namefile f0 df BPS >HG.tbl [c] tg2tg srcdir namefile dstdir >HG.tbl [e] tg2tg srcdir namefile f0 df BPS dstdir >HG.tbl

18 sp8ct : 18 srcdir CT namefile srcdir TIFF srcdir "-" "-" f0 df BPS f0 BPS CT CT BPS or16 dstdir CT CT TIFF [a] [b] [c] [d] tg2tg [a] [c] f0 df BPS BPS f0 df CT tg2tg HG.tbl tg2tg PN PV ff fc CT f0 df PN (2-9) SP- CT (3) (3-0) hp2comment hp2wl hp2comment {HP} hp2wl {HP} hp2comment HiPic ITEX hp2wl HP ITEX Windows DOS

19 sp8ct : 19 (3-1) hp2mean (3-2) hp2tiff (3-3) hp3txy txy_tif hp3pxy pxy_tif (3-4) hp2do DO_tbl (3-5) hp2sg hp2sg.om dit_tbl (3-6) sg2tg sg2tg_nai (3-7) sg2tgs sg2tgs_nai (3-8) sgs2tgs sgs2tgs_nai (3-9) tg2tg (4) SP- CT (4-0) SP- CT pr47 /home/image/demo/040711j raw/* raw 402 SP- CT output.log *.img *.bat *.csh raw/* *.csh UNIX Cygwin C-shell *.bat Windows DOS UNIX Cygwin shell C-shell shell j pr47 "cp -r" j/raw BL20B2 SP- CT

20 sp8ct : j mm orange glass ball + X 25 kev 10 sec. X I CT CT 180 X I CT I I I m = cm CT m = cm j SP- CT Windows DOS 1-0.bat 1-1.bat 2.bat 3.bat 4.bat 5.bat 6.bat 8-0.bat and 8-1.bat stand alone UNIX Linux Cygwin 1-0.bat 1-1.csh 2.bat 3.csh 4.bat 5.csh 6.bat 8-0.bat and 8-1.bat pr47 LSF UNIX Linux 1-0.bat 1-1.csh 2.bat 3.csh 4.bat 7-0.csh 7-1.csh 8-0.bat and 8-1.bat or 1-0.bat 1-1.csh 2.bat 3.csh 4.bat 7-0.csh csh csh 8-0.bat and 8-1.bat (4-1) SP- CT raw j raw CT dark.img 1-0.bat dark

21 sp8ct : 21 hp2mean raw/d01.img raw/d02.img raw/d.img raw/d01.img : time data not found (warning). raw/d02.img : time data not found (warning). CT Windows DOS 1-1.bat dit_tbl raw >nul UNIX Cygwin 1-1.csh dit_tbl raw >/dev/null (4-2) 2.bat 180 mkdir xp pxy_tif raw xp/000.tif pxy_tif raw xp/180.tif d.img = raw/d.img i.img = raw/q001.img t.img = raw/q002.img at angle = d.img = raw/d.img i.img = raw/q397.img t.img = raw/q396.img at angle = (4-3) 3.bat 3.csh DO_tbl raw >DO.tbl DO D000 = raw/d.img I000 = raw/q001.img T000 = raw/q002.img at angle = D180 = raw/d.img I180 = raw/q398.img T180 = raw/q399.img at angle = UNIX Cygwin DO.tbl 3.csh tail -1 DO.tbl

22 sp8ct : DO DO (4-4) 4.bat sg mkdir sg dit_tbl raw hp2sg sg (4-5) 360 test/360 Windows DOS 5.bat mkdir test\360 UNIX Cygwin 5.csh mkdir -p test/ DO bat 5.csh sg2tgs_nai sg/ test/360 >test/360.log test/360 TIFF DO (4-6) CT CT 16 bit CT 6.bat mkdir tg sgs2tgs sg tg >tg.log (4-7) pr47 pr47 LSF 7-0.csh 7-1.csh csh C-shell LSF bsub alias BSUB bsub -o LSF.log \!* BSUB LSF LSF.log

23 sp8ct : 23 (4-7-0) 7-0.csh mkdir -p test/240 test/480 BSUB sg2tgs_nai sg/ test/240 \>test/240.log BSUB sg2tgs_nai sg/ test/480 \>test/480.log LSF Job <13021> is submitted to default queue <normal>. Job <13022> is submitted to default queue <normal>. (4-7-1) 7-1.csh pr47 CPU j mkdir tg BSUB sgs2tgs sg tg \>tg.log LSF Job <13023> is submitted to default queue <normal>. sgs2tgs sgs2tgs_nai 20 (4-7-2) pr47 10 CPU j csh 10 mkdir tg foreach i ( ) BSUB sgs2tgs sg $i tg \>tg${i}.log end 10 Job <13024> is submitted to default queue <normal>. Job <13025> is submitted to default queue <normal>. Job <13026> is submitted to default queue <normal>. Job <13027> is submitted to default queue <normal>. Job <13028> is submitted to default queue <normal>. Job <13029> is submitted to default queue <normal>. Job <13030> is submitted to default queue <normal>. Job <13031> is submitted to default queue <normal>. Job <13032> is submitted to default queue <normal>. Job <13033> is submitted to default queue <normal>. bjobs csh sort tg[0-9].log >tg.log rm tg[0-9].log

24 sp8ct : 24 (4-8) CT CT 16 bit CT 8 bit LAC CT CT CT LAC CT PV CT 16 bit CT 8 bit PV (4-8-0) CT 8-0.bat 16 bit tg2tg tg - >tg_hg.tbl tg CT tg_hg.tbl CT /cm (4-8-1) CT CT 25 kev X SiO g/cc LAC /cm 16 bit CT 8 bit CT LAC PV bit CT CT CT = / 125 = bat 16 bit CT tg 8 bit CT byte byte_hg.tbl mkdir byte tg2tg tg byte >byte_hg.tbl

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