Table 1 Detection bacterial strains used in this study *1; Methicillin resistant strains(mrsa)
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- ゆきひら よしなが
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1 Key words: PCR, ribosomal RNA, bacterial contamination
2 Table 1 Detection bacterial strains used in this study *1; Methicillin resistant strains(mrsa)
3 PCR法 Fig. 1 Agarose gel ribosomal DNA Amplification primers (rdna) from using ethidium s are lar markers as resistant Typhi, 4; 6; Verotoxin (VTEC), 7; (EIEC), 10: C. in A, producing 3; each 5; mixed, E. coli 8; E. rdna coli A. Mlul, Eco molecular 所 の み で 切 断 さ れ,MluIで 541と347bp,EcoRIで 3; RI 1% A (E). on to E indi- type-1 (C), Lanes 0; individual to agarose parahaemolyticus MRSA HindlIl, 37 Ž. used dysenteriae performed marker Panels PCR- at strains, respectively. s (0./HindIII P. *, ) は は732と156bp,HindIIIで は758と130bpの る.そ PCR 1 to 1ƒÊl 60min TenƒÊl mixture fragments (B), (D) s water for metnod. sobria follows. 5 `10units) PCR- 類 の 制 限 酵 素 で 処 理 す る と,い HindIII. concentrated distilled 10ƒÊl or ten-fold incubated gel- as (about incubation, (A), ず れ の 場 合 も1ヵ 16ƒÊl aeruginosa で は 使 用 し た3種 3ƒÊl buffer, cates digested EcoRI performed product, confirm jciuni. target separately Mlul, endonuclease After endonuclease 2; endonuclease. PCR fragments amplified gel (888bp) Enteroinvasive Agarose restriction each (MRSA), parahaemolyticus, 9; An molecu- ), Paratyphi 2 restriction 11; 497 rdna agarose-gel 1 aureus cholerae, Typhimurium, 1% samples : s (ƒé/hindiii methicillin Fig. observed follows PCR- detection microorganisms. staining bromide. for に よ る細 菌汚 染 確 認 小 断片 とな る こ とがわ か って い こで そ れ らの 制 限 酵 素 の 認識 部 位 の有 無 に よ る 群 別 で は,全 て の 酵 素 に 感 受 性 のEcol4 Shigella spp.のi群,上 記2菌 EcoRIに 感 受 性 の あ るSalmonellaを るEnterobacteriaceae科 のII群,Mlulの 種 以 外 のMluI, は じめ とす お よ びAeromonas み で 切 断 さ れ るVibrio sppspp.とp. damselaのiii群,p.aeruginosa,c.jeiuni,c.fetus で み ら れ る よ う な3種 類 さ れ た.な 類 に 感 受 性 が な いIV群 おC.fetusで 合 に は,切 断 前rDNAサ はMlulで グ ラ ム 陽 性 菌 のMRSAで は み ら れ な か っ た. は グ ラ ム陰 性 菌 と同 じ 増 幅 さ れ た が,MluIに 受 性 が な く,EcoRI,HindIIIに I IV群 切 断 した 場 片 中 に は,HindIIIに2ヵ 認 識 部 位 を 持 つ こ と を 意 味 す る3断 平 成6年4月20日 は感 は 感 受 性 が あ り, と は 異 な っ た パ タ ー ン(V群)を ま た こ のrDNA断 I群 のE.coliやShigella 示 し た. 所 の 片 が 確 認 され spp-の 塩 基 配 列 とは 違 っ た も の で あ っ た(Fig.2). イ ズ よ り小 さ く な っ た 泳 動 像 が み ら れ た がC.jejuniで サ イ ズ の 標 的DNAが に分 考 察 細 菌 の タ ン パ ク 合 成 に 関 与 す る リボ ソ ー ム は, 近年 系統 発 生的 研 究 のた め そ の構造 解 析 が行 わ れ1),そ れ を 構 成 し て い るrRNAは,DNAに 比べ て 細 菌 細 胞 内 に 大 量 に 存 在 し て い る こ と か ら, PCRを 行 う に はDNAを 対 象 とす る よ り も 効 率 良 く実 施 で き る.rRNAに の3種 が 知 ら れ て い る が,そ は5S,16Sと23SRNA の 大 き さ か ら16Sが
4 Table 2 Restriction endonuclease patterns groups bacteria examined Verotoxin-producing E. coli; 2, Enteroinvasive E. coli; 1 Enteropathogenic E. coli; 1 strains examined. dysenteriae 1; flexneri 3a; 1 sonnei; 2 strains examined. Typhi; 2, Paratyphi A; 2, Enteritidis; 1 Typhimurium; 2 strains examined. C. freundii; 2 C. diversus; 5 strains examined. P. mirabilis; 1 P. vulgaris; 1 strains examined. K. pneumoniae; 2 K. oxytoca; 1 strains examined. A. hydrophila; 2 A. sobria; 1 strains examined. cholerae O1, strain 569B included. most clear DNA fragment this enzyme recognized a small fragment. This result not observed in case C. jejuni strains. two DNA fragments Hind III endonuclease different from its group I.
5 1) Dams, E., Hendriks, L., Van de Peer, Y., Neefs, J. -M., Smits, G., Venbempt, I. & De Wachter, R.: Compilation small ribosomal subunit RNA sequences. Nuc. Acid. Res., 16 (Suppl.): r87-r173, ) Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F.: Complete nucleotide sequence a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. U. A., 75: 4801 A Simple Rapid Confirmation Method Bacterial Contamination Using Polymerase Chain Reaction Kazuhiro KOBAYASHI Division Public Health, Osaka Prefectural Institute Public Health We studied method for detection bacterial contamination. Polymerase chain reaction (PCR) used to amplifity 888 base pair 16S ribosomal RNA (rrna) gene fragment various strains bacterial species. supernatant bacterial suspension treatment for 10 min at 100 Ž used for a template DNA. A total 151 strains 16 genus Gram-negative rod one genus Gram-positive cocci confirmed divided into five categories comparing patterns resulting from restriction endonuclease (Mlu I, Eco RI Hind III) cleavage target rdna fragment. se five types, such as Shigella spp. E. coli group (Group I), or nine genera Enterobacteria excluding Group I Aeromonas spp. (Group II), Vibrio spp. (Group III), Campylobacter spp. P. aeruginosa (Group IV), aureus (Group V), recognized. group I digested three enzymes used, group II Mlu I Eco RI but not Hind III, group III only Mul I, group IV not digested all enzymes. group V sensitive to Eco RI Hind III but resistant to Mlu I. This method is a widely applicable technique for detection bacterial contamination.
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