Science Technical challenge of PC HPC/Distributed Computing Meets Internet

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1 High-Performance Distributed Computing Metacomputing[Smarr87] The GRID [Foster98] book picture here GlobusNinf Web computing OGSA IT Peer-to-peer Grobal Forum IBM,HP,SUN

2 Science Technical challenge of PC HPC/Distributed Computing Meets Internet

3 : I-Way 1995 feasibility Alliance (NCSA) Virtual Machine Room PACIs (NCSA/SDSC NSF National Technology ) 1998 NASA Information Power 1999~ ASCI DISCOM 1999~ GriPhyN ( Physics Network), PPDG, 2000~ e (European ), (EU/CERN) Data, 2000~ Ap (Asia-Pacific ) 2000~ NCSA-SDSC Distributed Terascale System 2001~, IDVGL (Distributed Virtual Lab) 2001~ US Blue ribbon panel on Cyberinfrastracture (750 ) EU (6th Initiative) 3Euro, R&D 3Euro4 ( 650 /4) NaReGi (National Research Initiative) 5 100TFlops Thanks to Dr. Matsuoka

4 (2002) Ap ( ) PRAGMA(Pacific Rim and Middleware Assembly ) ( 123,24( ) with APAN, (2003) PRAGMA(Pacific Rim and Middleware Assembly ) 123,24( ) with APAN, C) with Fran Berman GGF7 at Shinjuku (3/4/2003-3/6/2003) Life Science mini workshop (3/5, 6) NaReGi cc (5/2003)

5 C) IT [2001/ /3] A05: NII SINET [2001/ /3] GRID NECSX5GLOBUS ITBL (IT based Laboratory) IT NaReGi (National Research Initiative) NaReGI: National Research Infrastructure ( ) IT SuperSINET PL( ) ( ) ( ) ) 7 NII ( GSIC/NII) ( R&D ( ) ( )) ( ) ACT-JST ITBL IT R&D (NII) AIST (SuperSINET)

6 RPC, MPI F,H,N NII,F,H,N PSE NII,F,H,N / / FTP

7 (IT),

8 Si Si Si Si Si MPLS 500M- 622M; VLAN 200M(ITBL), 200M (Internet-SINET), 100M(Bio-) jm20-tao OC-3 su1i-cmc M Si al04-cmc007 al08-handai bd16-cmc002bd16-cmc001 jm20-cmc001, jm20-cmc M jm20-ext 200M GSR M Super SINET 622M HW MPLS 200M 200M 100M SINET ITBL Super Computer 1 SDSC USA SPring-8 BII Singapore 1) 2) IPv6 (6) XML 3) ASP 4) XML

9 1), NEC 2) SPring-8 3), 4), 5) SDSC NEC BII QoS (Quality of Service) IPv6/IPSec E-Commerse, E-Business ITBL GRID Everything on IPv6 QoS

10 in silico Intelligent Intelligent Intelligent

11 Quantum Mechanics Calculations Molecular Mechanics Calculations by AMOSS (NEC by presto ( 1,100 HOMO K + - ( ( - SPring-8 XML DNA

12 DB DB DB DB DB DB DB DNA (PDB) (SWISS-PROT)

13 XML XML-DB DB XML DB XML XML DB XML-DB PRF DB DB XML XML XML XML DB XML (flat file) PDB, PIR XML SWISS-PROT XML XML-DB XML-DB XML-DB (UHVEM) (MEG) Spring-8 (E-Science) Intelligent

15 R&D of biogrid software Molecular simulation [MD] [Molecular orbital method] Protein structural analysis Genome data analysis [Mutual comparison, reference, and a classification of genome data] Clusters (I) Pentium IV GHz R&D of Biogrid core Software (middleware) 16CPU High-speed processing of large-scale data Secure data sharing Pentium III 1.13GHz Dual 76node 152CPU Clusters (II) ODINS High-speed campus network Large-scale bio database Datagrid disk Clusters (III) High-speed network Alpha 1GHz Dual 64GB memory 4node 8CPU High-speed network connection equipment Pentium III 700MHz Quad 16 CPU Intramural 15TB related department etc. Protein solid structure DNA sequence Pragma 3 rd GGF7 Life Science Workshop

16 Technical Challenge of Coordinated Computing Knowledge Knowledge Knowledge Knowledge Computing Computing Computing Data Data Data Data

Molecules Synchrotrons Macromolecular Complexes, Organelles, Cells Microscopes Magnetic Resonance Imagers Organs, Organ Systems, Organisms

17 Molecules Synchrotrons Macromolecular Complexes, Organelles, Cells Microscopes Magnetic Resonance Imagers Organs, Organ Systems, Organisms Courtesy of Mark Ellisman THE BIOMEDICAL INFORMATICS RESEARCH NETWORK LAYOUT FOR PHASE 1 Drop the ball in the middle Courtesy of Mark Ellisman

18 24x7 Operations Monitoring BIRN Network Operations Center (NOC) Logical Description with Standardized Site Rack BIRN NOC Monitoring Internet 2 SDSC Network Network Switch BIRN Statistics BIRN Network Probe Network Attached Storage POP/ SRB, Globus Dual Processor General purpose ( eg., encryption) UPS for Rack NCRR Cisco 4006 DL380 - Network Stats GigE Net Probe N2400 NAS TB DL380 POP DL380 APC UPS BIRN Site Rack NOC Servers and Testers/Analyzers Si Si GB Switches Gigabit Network Probes BIRN Network Management Courtesy of Mark Ellisman IT

19 ( ) DR 6 1 WG BERI,BGBC,

20 , GSI-SFS) (MEG) <hard+soft> XML World-wide Collaborative Research Activity SC2002, PRAGMA GGF Life-Science workshop Web computing

DataGrid Project 30MB/sec Digital Sky and the Grid WWW-DB DB enhance Image() Network Network

E-science -- IT -- www.biogrid.jp e-science DataGrid Project 30MB/sec Digital Sky and the Grid WWW-DB DB enhance Image() Network Network SDSS(Sloan Digital Sky Servey) http://skyserver.sdss.org/edr/jp/sdss/discoveries/disc