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tmrna tmrna RNA mrna turnover RNase class I peptide release factor RF ribosome rescue trna mrna transfer-messenger RNA tmrna RNA tmrna SmpB trna transtranslation C tmrna mrna ATP tmrna tmrna tmrna-independent ribosome rescue systems in bacteria and mitochondria Nobukazu Nameki Division of Molecular Science, Faculty of Science and Technology, Gunma University, Tenjincho, Kiryu-shi, Gunma, Japan tmrna tmrna SmpB tmrna ssra mrna tmrna tmrna YaeJ ArfA YaeJ RF trna PTH GGQ Gly-Gly-Gln YaeJ tmrna YaeJ ICT DNA mtdna tmrna SmpB ICT GGQ Corf tmrna GGQ pp.

ICTYaeJ Corf ICT NMR RF β β RF π-hb turnict α-helix αi ICT RF ICTYaeJ PTH ICTYaeJ RF ICT ICT RF RF erf GGQ RF RF A ICT YaeJ N RF Corf ICT RF β βrf π-hb turn Corf ICT ICT GGQ GGQ YaeJ YaeJ GGQ YaeJ YaeJ PTH PUREsystem mrna crp nonstop mrna Lys SDS YaeJ trna YaeJ trna Crp Anonstop mrna YaeJ PTH Arg mrna YaeJ PTH tmrna mrna YaeJ YaeJ YaeJ S C YaeJ C in vitro YaeJ tmrna ArfA suppress yaej YaeJ tmrna YaeJ PTH codon-independent RF cirf tmrna YaeJ tmrna mrna A tmrna A mrna YaeJ A mrna tmrna

GGQ A GGQ GGQ GGQ αi α-helix BGGQ α β α-helix β-strand -helix C CorfPDB code RSM ICTJ mrna YaeJ mrna RNase mrna A-site cleavagetmrna SmpB YaeJ Steitz YaeJ Thermus thermophilus

YaeJ ICT Corf A SDS YaeJ PTH B RNAi ICT Corf si-nt non-targeting duplex sirnas C ICT Corf MitoTracker Red CMXRos MitoTracker Green FM Flow cytometry RF P trna trna YaeJ C α-helix mrna entry channels mrna α-helix flexible linker α-helix S SmpB YaeJ C tmrna SmpB A C α-helix mrna entry channel YaeJ SmpB YaeJ S RNA G syn anti mrna A YaeJ mrna entry channel mrna YaeJ C YaeJ T. thermophilus ICT ICTHT-D immature colon carcinoma cell transcript ICT Chrzanowska-Lightowlers ICT

ICT sirna ICT mtdna S ICT PTH nonstop mrna ICT ICT mtdna Corf tmrna SmpB ICT ICT GGQ Corf corf nonsense Corf corf nonsense Shoubridge ICT ICT c COX Corf ICT ICT S nonstop mrna PTH PTH PTH ICT Corf Flow cytometry ICTCorf RNAi ICT Corf B Corf ICT C ICT Corf ICT Corf GGQ YaeJ ArfA yhdl ArfA ArfA tmrna ArfA mrna C RNase III nonstop mrna tmrna SmpB ArfA C tmrna SmpB tmrna ArfA ArfA ArfA tmrna YaeJ ArfA GGQ PTH

RF ArfA trna ArfA RF tmrna SmpB ArfA NeisserialesEnterobacteriales YaeJ ICT Corf tmrna Moore, S.D. & Sauer, R.T.Annu. Rev. Biochem.,,. Hayes, C.S. & Keiler, K.C.FEBS Lett.,,. Janssen, B.D. & Hayes, C.S. Adv. Protein Chem. Struct. Biol.,,. Handa, Y., Inaho, N., & Nameki, N.Nucleic Acids Res.,,. Handa, Y., Hikawa, Y., Tochio, N., Kogure, H., Inoue, M., Koshiba, S., Güntert, P., Inoue, Y., Kigawa, T., Yokoyama, S., & Nameki, N.J. Mol. Biol.,,. Kogure, H., Hikawa, Y., Hagihara, M., Tochio, N., Koshiba, S., Inoue, Y., Güntert, P., Kigawa, T., Yokoyama, S., & Nameki, N.Proteins,,. Chadani, Y., Ono, K., Kutsukake, K., & Abo, T.Mol. Microbiol.,,. Asano, K., Kurita, D., Takada, K., Konno, T., Muto, A., & Himeno, H.Nucleic Acids Res.,,. Ivanova, N., Pavlov, M.Y., Felden, B., & Ehrenberg, M. J. Mol. Biol.,,. Shimizu, Y.J. Mol. Biol.,,. Sunohara, T., Jojima, K., Tagami, H., Inada, T., & Aiba, H. J. Biol. Chem.,,. Hayes, C.S. & Sauer, R.T.Mol. Cell,,. Gagnon, M.G., Seetharaman, S.V., Bulkley, D., & Steitz, T.A. Science,,. Kurita, D., Muto, A., & Himeno, H.J. Nucleic Acids,,. Neubauer, C., Gillet, R., Kelley, A.C., & Ramakrishnan, V. Science,,. van Belzen, N., Diesveld, M.P., van der Made, A.C., Nozawa, Y., Dinjens, W.N., Vlietstra, R., Trapman, J., & Bosman, F.T. Eur. J. Biochem.,,. Richter, R., Rorbach, J., Pajak, A., Smith, P.M., Wessels, H.J., Huynen, M.A., Smeitink, J.A., Lightowlers, R.N., & Chrzanowska-Lightowlers, Z.M.EMBO J.,,. Antonicka, H., Ostergaard, E., Sasarman, F., Weraarpachai, W., Wibrand, F., Pedersen, A.M., Rodenburg, R.J., van der Knaap, M.S., Smeitink, J.A., Chrzanowska-Lightowlers, Z.M., & Shoubridge, E.A.Am.J.Hum.Genet.,,. Shimazaki, H., Takiyama, Y., Ishiura, H., Sakai, C., Matsushima, Y., Hatakeyama, H., Honda, J., Sakoe, K., Naoi, T., Namekawa, M., Fukuda, Y., Takahashi, Y., Goto, J., Tsuji, S., Goto, Y., Nakano, I., & Japan Spastic Paraplegia Research, C. J. Med. Genet.,,. Chadani, Y., Ono, K., Ozawa, S., Takahashi, Y., Takai, K., Nanamiya, H., Tozawa, Y., Kutsukake, K., & Abo, T. Mol. Microbiol.,,. Garza-Sanchez, F., Schaub, R.E., Janssen, B.D., & Hayes, C.S. Mol. Microbiol.,,. Chadani, Y., Ito, K., Kutsukake, K., & Abo, T.Mol. Microbiol.,,. http:molbio.dept.eng.gunma-u.ac.jp